2011/01/30 14:35:46
<?xml version="1.0" encoding="UTF-8"?>
<BRIG blastOptions="" queryFile="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/BRIGExample.fna" outputFolder="/home/nabil/" blastPlus="yes" interactive="no" outputFile="/home/nabil//BRIGExample.fna" title="" queryFastaFile="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/BRIGExample.fna" cgXML="/home/nabil//scratch/BRIGExample.fna.xml" spacer="0">
  <cgview_settings arrowheadLength="medium" backboneColor="black" backboneRadius="600" backboneThickness="medium" backgroundColor="white" borderColor="black" featureSlotSpacing="medium" featureThickness="30" giveFeaturePositions="false" globalLabel="true" height="1700" isLinear="false" labelFont="SansSerif,plain,25" labelLineLength="medium" labelLineThickness="medium" labelPlacementQuality="best" labelsToKeep="1000" longTickColor="black" minimumFeatureLength="medium" moveInnerLabelsToOuter="true" origin="12" rulerFont="SansSerif,plain,35" rulerFontColor="black" rulerPadding="40" rulerUnits="bases" shortTickColor="black" shortTickThickness="medium" showBorder="true" showShading="true" showWarning="false" tickDensity="0.2333" tickThickness="medium" titleFont="SansSerif,plain,45" titleFontColor="black" useColoredLabelBackgrounds="false" useInnerLabels="true" warningFont="Default,plain,35" warningFontColor="black" width="1700" zeroTickColor="black" />
  <brig_settings Ring1="102,0,102" Ring2="0,102,102" Ring3="0,102,0" Ring4="0,0,153" Ring5="102,102,0" Ring6="0,153,0" Ring7="204,51,0" Ring8="0,102,102" Ring9="0,153,102" Ring10="204,0,51" defaultUpper="70" defaultLower="50" defaultMinimum="50" genbankFiles="gbk" fastaFiles="fna,faa,fas,fasta,fa" emblFiles="embl" blastLocation="" divider="3" multiplier="3" memory="1500" defaultSpacer="0" />
  <special value="GC Content" />
  <special value="GC Skew" />
  <refDir location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes">
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/Ecoli_O126.fna" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/E_coli_O157H7Sakai.gbk" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/BRIGExample.graph" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/E_coli_K12MG1655.fna" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/EHEC_vir.fna" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/BRIGExample.fna" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/E_coli_CFT073.fna" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/E_coli_UTI89.fna" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/E_coli_HS.fna" />
  </refDir>
  <ring position="0" colour="102,0,102" name="Poopy" upperInt="70" lowerInt="50" legend="yes" blastType="blastn" size="30" labels="no">
    <sequence location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/Ecoli_O126.fna" blastResults="/home/nabil//scratch/Ecoli_O126.fnaVsBRIGExample.fna.tab" />
  </ring>
</BRIG>

2011/01/30 15:12:37
<?xml version="1.0" encoding="UTF-8"?>
<BRIG blastOptions="" queryFile="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/BRIGExample.fna" outputFolder="/home/nabil/" blastPlus="yes" interactive="no" outputFile="/home/nabil//BRIGExample.fna" title="" queryFastaFile="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/BRIGExample.fna" cgXML="/home/nabil//scratch/BRIGExample.fna.xml">
  <cgview_settings arrowheadLength="medium" backboneColor="black" backboneRadius="600" backboneThickness="medium" backgroundColor="white" borderColor="black" featureSlotSpacing="medium" featureThickness="30" giveFeaturePositions="false" globalLabel="true" height="1700" isLinear="false" labelFont="SansSerif,plain,25" labelLineLength="medium" labelLineThickness="medium" labelPlacementQuality="best" labelsToKeep="1000" longTickColor="black" minimumFeatureLength="medium" moveInnerLabelsToOuter="true" origin="12" rulerFont="SansSerif,plain,35" rulerFontColor="black" rulerPadding="40" rulerUnits="bases" shortTickColor="black" shortTickThickness="medium" showBorder="true" showShading="true" showWarning="false" tickDensity="0.2333" tickThickness="medium" titleFont="SansSerif,plain,45" titleFontColor="black" useColoredLabelBackgrounds="false" useInnerLabels="true" warningFont="Default,plain,35" warningFontColor="black" width="1700" zeroTickColor="black" />
  <brig_settings Ring1="102,0,102" Ring2="0,102,102" Ring3="0,102,0" Ring4="0,0,153" Ring5="102,102,0" Ring6="0,153,0" Ring7="204,51,0" Ring8="0,102,102" Ring9="0,153,102" Ring10="204,0,51" defaultUpper="70" defaultLower="50" defaultMinimum="50" genbankFiles="gbk" fastaFiles="fna,faa,fas,fasta,fa" emblFiles="embl" blastLocation="" divider="3" multiplier="3" memory="1500" defaultSpacer="0" />
  <special value="GC Content" />
  <special value="GC Skew" />
  <refDir location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes">
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/Ecoli_O126.fna" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/E_coli_O157H7Sakai.gbk" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/BRIGExample.graph" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/E_coli_K12MG1655.fna" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/EHEC_vir.fna" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/BRIGExample.fna" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/E_coli_CFT073.fna" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/E_coli_UTI89.fna" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/E_coli_HS.fna" />
  </refDir>
  <ring position="0" colour="102,0,102" name="Poopy" upperInt="70" lowerInt="50" legend="yes" blastType="blastn" size="30" labels="no">
    <sequence location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/Ecoli_O126.fna" blastResults="/home/nabil//scratch/Ecoli_O126.fnaVsBRIGExample.fna.tab" />
  </ring>
</BRIG>

2011/01/30 15:12:44
<?xml version="1.0" encoding="UTF-8"?>
<BRIG blastOptions="" queryFile="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/EHEC_vir.fna" outputFolder="/home/nabil/" blastPlus="yes" interactive="no" outputFile="/home/nabil//BRIGExample.fna" title="" queryFastaFile="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/BRIGExample.fna" cgXML="/home/nabil//scratch/BRIGExample.fna.xml" spacer="0">
  <cgview_settings arrowheadLength="medium" backboneColor="black" backboneRadius="600" backboneThickness="medium" backgroundColor="white" borderColor="black" featureSlotSpacing="medium" featureThickness="30" giveFeaturePositions="false" globalLabel="true" height="1700" isLinear="false" labelFont="SansSerif,plain,25" labelLineLength="medium" labelLineThickness="medium" labelPlacementQuality="best" labelsToKeep="1000" longTickColor="black" minimumFeatureLength="medium" moveInnerLabelsToOuter="true" origin="12" rulerFont="SansSerif,plain,35" rulerFontColor="black" rulerPadding="40" rulerUnits="bases" shortTickColor="black" shortTickThickness="medium" showBorder="true" showShading="true" showWarning="false" tickDensity="0.2333" tickThickness="medium" titleFont="SansSerif,plain,45" titleFontColor="black" useColoredLabelBackgrounds="false" useInnerLabels="true" warningFont="Default,plain,35" warningFontColor="black" width="1700" zeroTickColor="black" />
  <brig_settings Ring1="102,0,102" Ring2="0,102,102" Ring3="0,102,0" Ring4="0,0,153" Ring5="102,102,0" Ring6="0,153,0" Ring7="204,51,0" Ring8="0,102,102" Ring9="0,153,102" Ring10="204,0,51" defaultUpper="70" defaultLower="50" defaultMinimum="50" genbankFiles="gbk" fastaFiles="fna,faa,fas,fasta,fa" emblFiles="embl" blastLocation="" divider="3" multiplier="3" memory="1500" defaultSpacer="0" />
  <special value="GC Content" />
  <special value="GC Skew" />
  <refDir location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes">
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/Ecoli_O126.fna" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/E_coli_O157H7Sakai.gbk" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/BRIGExample.graph" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/E_coli_K12MG1655.fna" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/EHEC_vir.fna" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/BRIGExample.fna" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/E_coli_CFT073.fna" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/E_coli_UTI89.fna" />
    <refFile location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/E_coli_HS.fna" />
  </refDir>
  <ring position="0" colour="102,0,102" name="Poopy" upperInt="70" lowerInt="50" legend="yes" blastType="blastn" size="30" labels="no">
    <sequence location="/home/nabil/pro/BRIG_PROJECT/BRIGEXAMPLE/genomes/Ecoli_O126.fna" blastResults="/home/nabil//scratch/Ecoli_O126.fnaVsBRIGExample.fna.tab" />
  </ring>
</BRIG>

